Primer synthesis is a multi-step chemical reaction, and the efficiency of each step of synthesis is 99% at most, and by-products cannot be avoided. The longer the chain, the higher the cumulative frequency of mutations. When you clone and sequence after PCR amplification, in order to save time and improve the success rate, we have the following suggestions.
(1) Please prepare 2~3 positive clones of the bacteriophage after you detect the positive clone, and try to send 2 or more clones for sequencing, so that the success rate will be greatly improved and a lot of time will be saved.
(2) You can also send one clone for testing first, and store the rest two clones of the bacteriophage in the refrigerator at 4 degrees, and send the remaining two clones for testing as soon as individual point mutations or deletions occur.
(3) This will have a very high probability of getting the correct sequence and will eliminate the need for a series of experimental operations such as re-PCR, ligation, cloning and screening, saving even more time.
If you find more than 2~3 clones with mutations in the primer region, and it is confirmed that it is caused by the primer, we will arrange for the expedited free recombination immediately and send it to you as soon as possible.